All functions

display_AllPlots()

Display All Plots from Multiple Scores Plots Object

getScreeData()

Extract Scree Plot Data

get_auroc_summary()

Get AUROC summary statistics

perform_AUROC()

Perform Area Under the Receiver Operating Characteristic Curve Analysis

perform_ComparativeAnalysis()

Perform Comparative Statistical Analysis on Preprocessed Metabolomics Data

perform_DataQualityCheck()

Perform Comprehensive Data Quality Check for Metabolomics Data

perform_Export2Excel()

Export Data Frames to Excel Workbook

perform_ExportPlots2Image()

Export Plot Objects to Image Files

perform_FoldChange()

Perform Fold Change Analysis on Preprocessed Peak Data

perform_PCA()

Perform Principal Component Analysis (PCA)

perform_PLS()

Perform Orthogonal Partial Least Squares Discriminant Analysis (OPLS-DA) and Related Methods

perform_PreprocessingPeakData()

Comprehensive Data Preprocessing Pipeline

perform_Regression()

Perform LASSO and Elastic Net Regression with Cross-Validation

plot(<pls_results>)

Plot Method for PLS Analysis Results

plot_auroc_distribution()

Plot AUROC distribution

plot_BeforeAfter()

Visualize Data Before and After Preprocessing

plot_CorrelationHeatmap()

Plot Correlation and Hierarchical Clustering Heatmaps

plot_Volcano()

Create Volcano Plots for Differential Expression Analysis

print(<pls_results>)

Print Method for PLS Analysis Results